species:   Scscl
pid:       PID1696
parent:    Ssc-milR-172
paralog:   
locus:     NW_001820832.1:731199-731288
matures:   ['GGAGUUGAAUAAUCAGAUGA', 'AUUUCGUAUAUUUUCCAA']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820832.1:731199-731288

89 out of bounds
22 alignments
6 proper strand
1 stranded perfect matches

     *************************            **********************                          
ACGGGCUGAUGGAGUUGAAUAAUCAGAUGAUGCAGAUGAGCAAAAUUUCGUAUAUUUUCCAAGGUUCAGAAACCCCACUUGGUUUCUGUG
..(((((..((((...(((((((.((((..(((......)))..)))).)).))))))))).)))))(((((((......)))))))...
----------GGAGUUGAAUAAUCAGAUGA------------------------------------------------------------ l=20 a=0 c
--------------------------------------------AUUUCGUAUAUUUUCCAA---------------------------- l=18 a=0 c*
-------GAUGGAGUUGAAUAAUCAGAUGA------------------------------------------------------------ l=23 a=1 ma
--------------------------------------------AUUUCGUAUAUUUUCCAAGG-------------------------- l=20 a=0 ma*

-------GAUGGAGUUGAAUAAUCAGAUGA------------------------------------------------------------ l=23 a=1 (ma)
----------GGAGUUGAAUAAUCAGAUa------------------------------------------------------------- l=19 a=4 
----------GGAGcUGAAUAAUCAGAUGA------------------------------------------------------------ l=20 a=1 

mb-01011
ax-1001011
ku-01
ss-100110001100
fn-001
